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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50094228_50094999_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50094228 - 50094999
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACGTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTTCTGTGACA
Flanking Amino Acid:
KEVLEPYKRRFILQEVDITL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.2
62.8
40.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
79
0.65
1
76
38
Minor 5ss
41.1
-1
3.2
46.5
48.9
Minor BPS
65.4
0.48
2
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003086
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003120
50085452 - 50095179
9728