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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50191456_50191766_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50191456 - 50191766
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
CTGTTGACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTCCAAACC
Flanking Amino Acid:
EIIVEEEDQQGGPTASNKNC
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
65
0.34
1
59.2
40.7
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
60.1
0.3
2
78.54
37

Associated Gene:

Gene:
LMNB1
Ensembl Gene ID:
ENSAPLG00000015349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037069
50191414 - 50206936
15523
ENSAPLT00000020017
50191381 - 50213144
21764