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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50192689_50193172_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50192689 - 50193172
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TGACCTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TGACCTTTAACA
Flanking Amino Acid:
YVLKAGQTVTIWAANAGVTA
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
70.5
0.46
1
65.6
39.6
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
72.8
0.71
1.2
74.84
36

Associated Gene:

Gene:
LMNB1
Ensembl Gene ID:
ENSAPLG00000015349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020017
50191381 - 50213144
21764
ENSAPLT00000016049
50191731 - 50209765
18035
ENSAPLT00000037069
50191414 - 50206936
15523
ENSAPLT00000028236
50167519 - 50205580
38062
ENSAPLT00000020384
50191647 - 50209177
17531