Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50204431_50205454_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50204431 - 50205454

Intron Length:

1024

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ATCTATTGAATG

Flanking Amino Acid:

LEFRKNMYEEEINETKRKHE

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

0.65

0.9

77.1

37.1

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

49.4

-0.1

1.7

55.33

40.4

Associated Gene:

Gene:

LMNB1

Ensembl Gene ID:

ENSAPLG00000015349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020017

50191381 - 50213144

21764

ENSAPLT00000032724

50189961 - 50209221

19261

ENSAPLT00000016049

50191731 - 50209765

18035

ENSAPLT00000031661

50191731 - 50207179

15449

ENSAPLT00000028236

50167519 - 50205580

38062

ENSAPLT00000039549

50191731 - 50209177

17447

ENSAPLT00000020384

50191647 - 50209177

17531

ENSAPLT00000037069

50191414 - 50206936

15523