About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50206937_50211607_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50206937 - 50211607
Intron Length:
4671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TCCTTTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTCTCCTTTATT
Flanking Amino Acid:
MVKHYAKKESDFN
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84.6
0.78
0.8
77
35.9
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
67.8
0.64
1.6
79.57
42.9

Associated Gene:

Gene:
LMNB1
Ensembl Gene ID:
ENSAPLG00000015349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020017
50191381 - 50213144
21764