Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50206957_50209759_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

50206957 - 50209759

Intron Length:

2803

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTTCTTCCT

5'SS Class:

weak_major

3'SS Sequence:

CATTTTCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTCAC

U12 Branch Point Sequence:

ATTTTCTTACAG

Flanking Amino Acid:

AQLSLLYSSYAK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.8

0.07

1.2

54.2

42.7

Major BPS

67.1

0.43

1.2

69.3

37.7

Major PPT

86.1

0.81

0.8

80.2

31.5

Minor 5ss

33.9

-1.8

44.3

36.7

Minor BPS

58.7

0.13

1.8

66.56

41.1

Associated Gene:

Gene:

LMNB1

Ensembl Gene ID:

ENSAPLG00000015349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016049

50191731 - 50209765

18035