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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50255927_50257506_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50255927 - 50257506
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
TPSVKEEQIKEIFYLENQKE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
83.9
0.76
0.9
83.4
32
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
PHAX
Ensembl Gene ID:
ENSAPLG00000012512
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013026
50254657 - 50264580
9924