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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50324773_50325150_F

Intron Information:

Intron Rank:
137513
Intron Class:
major
Intron Phase:
Intron Coordinates:
50324773 - 50325150
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTCCTTCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
74.8
0.56
1
72.4
38.1
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
66.9
0.39
2
76.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032254
50321048 - 50325446
4399