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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50325223_50325323_F

Intron Information:

Intron Rank:
137514
Intron Class:
major
Intron Phase:
Intron Coordinates:
50325223 - 50325323
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
TTCTTGGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.5
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
38.9
-1.2
3.4
55.1
43.5
Minor BPS
72.7
0.69
1.5
80.71
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024045
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032254
50321048 - 50325446
4399