Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50520570_50522817_F

Intron Information:

Intron Rank:

128240

Intron Class:

major

Intron Phase:

Intron Coordinates:

50520570 - 50522817

Intron Length:

2248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

ATATGTACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ATTTTATTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.1

31.8

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

71.1

0.47

63.8

Minor 5ss

38.4

-1.3

45.7

43.4

Minor BPS

67.1

0.61

1.7

84.88

34.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047051

50519836 - 50527152

7317

ENSAPLT00000029908

50520223 - 50528827

8605