About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50627297_50644958_R

Intron Information:

Intron Rank:
137895
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
50627297 - 50644958
Intron Length:
17662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATGGACTTTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
58.8
0.2
1.2
56.4
43
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021691
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034802
50627082 - 50645827
18746