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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50644836_50644958_R

Intron Information:

Intron Rank:
137896
Intron Class:
major
Intron Phase:
Intron Coordinates:
50644836 - 50644958
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTTGCTTACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.7
0.53
0.9
68.4
36.4
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
50.6
-0
2.1
67.09
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021691
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045847
50644406 - 50645827
1422