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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50648588_50659628_F

Intron Information:

Intron Rank:
132358
Intron Class:
major
Intron Phase:
Intron Coordinates:
50648588 - 50659628
Intron Length:
11041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATATATATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
43.4
-0.4
2
62.83
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021114
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027615
50648116 - 50659942
11827
ENSAPLT00000017514
50648116 - 50661984
13869