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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5070888_5076142_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5070888 - 5076142
Intron Length:
5255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGAGT
Flanking Amino Acid:
PPANGTDSIMANRGSGAAGS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
57.5
0.32
2
81.47
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011135
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011620
5062703 - 5077811
15109