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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50989951_50991032_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50989951 - 50991032
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGTTTCTGTATT
Flanking Amino Acid:
EWERHVLRHGMALNESKHGT
Intron Amino Acid Position:
2329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
74.3
0.55
1
69.2
41.8
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
56.3
0.28
1.8
77.06
39.7

Associated Gene:

Gene:
ZNF462
Ensembl Gene ID:
ENSAPLG00000016551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022670
50989749 - 51082577
92829
ENSAPLT00000019074
50989749 - 51082577
92829