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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_50999045_51004024_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50999045 - 51004024
Intron Length:
4980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTGTTAAGT
Flanking Amino Acid:
NMIDHIVLHREERVVPIEVC
Intron Amino Acid Position:
2172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.8
0.71
0.8
75.6
33
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
52.2
0.15
2.3
74.86
42

Associated Gene:

Gene:
ZNF462
Ensembl Gene ID:
ENSAPLG00000016551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022670
50989749 - 51082577
92829
ENSAPLT00000019074
50989749 - 51082577
92829
ENSAPLT00000045776
50993774 - 51043692
49919