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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51034036_51036241_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51034036 - 51036241
Intron Length:
2206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GATGTCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GGGTTTTGATGT
Flanking Amino Acid:
NVSSVSATVKGLRSHERSHL
Intron Amino Acid Position:
1964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.7
0.44
1
62.7
43
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
42.1
-0.5
1.8
53.39
42.1

Associated Gene:

Gene:
ZNF462
Ensembl Gene ID:
ENSAPLG00000016551
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022670
50989749 - 51082577
92829
ENSAPLT00000019074
50989749 - 51082577
92829
ENSAPLT00000045776
50993774 - 51043692
49919