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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51095498_51099425_F

Intron Information:

Intron Rank:
126544
Intron Class:
major
Intron Phase:
Intron Coordinates:
51095498 - 51099425
Intron Length:
3928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTATCTGTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATCTGTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.2
0.52
1
66.7
43.7
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
51.7
0.05
2.2
71.6
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018192
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028510
51095397 - 51105289
9893