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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51099167_51099405_F

Intron Information:

Intron Rank:
126542
Intron Class:
major
Intron Phase:
Intron Coordinates:
51099167 - 51099405
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
TATTATTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.3
0.68
0.9
78.2
39.7
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
53.5
0.09
1.8
67.92
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018192
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026120
51099034 - 51105289
6256