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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51154193_51155237_R

Intron Information:

Intron Rank:
149929
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
51154193 - 51155237
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGCACACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTCACACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
50.2
0.01
1.1
47.3
39.5
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
46.7
-0.1
2
68.02
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028232
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023186
51153770 - 51201157
47388