Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51155332_51200821_R

Intron Information:

Intron Rank:

149930

Intron Class:

major

Intron Phase:

Intron Coordinates:

51155332 - 51200821

Intron Length:

45490

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCTATTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

TTTTTCCTATTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.2

39.9

Major BPS

64.9

0.37

37.5

Major PPT

82.3

0.73

0.8

83.2

Minor 5ss

39.7

-1.2

2.9

52.1

44.7

Minor BPS

57.5

0.23

1.9

75.44

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028232

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023186

51153770 - 51201157

47388