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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5141509_5141850_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5141509 - 5141850
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGACTAAA
5'SS Class:
major
3'SS Sequence:
CTCCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTAAACTC
Flanking Amino Acid:
QMMSRNEDSKRCLAVQQDIA
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
70.6
37
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73
0.52
0.8
64.4
36.6
Minor 5ss
35.6
-1.6
2.7
42.5
44.5
Minor BPS
44.1
-0.4
2.1
58.11
41.8

Associated Gene:

Gene:
CCDC68
Ensembl Gene ID:
ENSAPLG00000010764
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011214
5135114 - 5142822
7709
ENSAPLT00000011223
5137567 - 5142990
5424
ENSAPLT00000011219
5136748 - 5142990
6243