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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5141957_5142256_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5141957 - 5142256
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTAACTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCTTTCCTAACT
Flanking Amino Acid:
HQSLRRVIQEAEELNEELKI
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
67.3
0.39
0.9
58.5
37.1
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
65.3
0.56
1.7
79.84
42.4

Associated Gene:

Gene:
CCDC68
Ensembl Gene ID:
ENSAPLG00000010764
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011214
5135114 - 5142822
7709
ENSAPLT00000011223
5137567 - 5142990
5424
ENSAPLT00000011219
5136748 - 5142990
6243