Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51424844_51425834_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51424844 - 51425834

Intron Length:

991

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTACTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGCAACTTAACC

Flanking Amino Acid:

LYTIFLVVSKVKMMLTRSAA

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.6

0.67

0.8

74.7

35.1

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

63.5

0.4

1.6

69.25

41.6

Associated Gene:

Gene:

TMEM38B

Ensembl Gene ID:

ENSAPLG00000019198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038390

51423696 - 51438316

14621

ENSAPLT00000027119

51423696 - 51438312

14617