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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51481301_51484486_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51481301 - 51484486
Intron Length:
3186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TTTTGTGGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
CAGTCTTCTACT
Flanking Amino Acid:
GTQAKSGKKFKYLFPKFTLC
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
73.6
35
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
77.7
0.62
1
72.9
42.2
Minor 5ss
43.9
-0.7
2.8
59.4
38.9
Minor BPS
48.8
-0
1.9
64.79
45.8

Associated Gene:

Gene:
FKTN
Ensembl Gene ID:
ENSAPLG00000013432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013985
51480087 - 51495609
15523