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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51486015_51487019_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51486015 - 51487019
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AACTAACTAATT
Flanking Amino Acid:
KFWLSSGTCLGWYRQCNVIP
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.1
0.72
0.7
80.6
24.6
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
45.3
-0.2
2
62.89
40.8

Associated Gene:

Gene:
FKTN
Ensembl Gene ID:
ENSAPLG00000013432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013985
51480087 - 51495609
15523