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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51488756_51490021_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51488756 - 51490021
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AACTTTTCATCT
Flanking Amino Acid:
HFGRYPGAYEKPELLLVSID
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.8
77.9
29.8
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
47.8
-0
1.7
63
41.5

Associated Gene:

Gene:
FKTN
Ensembl Gene ID:
ENSAPLG00000013432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013985
51480087 - 51495609
15523