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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51490300_51492368_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51490300 - 51492368
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTCTCTTATTT
Flanking Amino Acid:
ALLDKTWKHEVGLFRTAEKM
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.4
0.73
0.7
81.1
29.7
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
61.9
0.45
1.6
76.56
40.7

Associated Gene:

Gene:
FKTN
Ensembl Gene ID:
ENSAPLG00000013432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013985
51480087 - 51495609
15523