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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51492573_51494766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51492573 - 51494766
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TCCTCTGTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATATTTCTAACT
Flanking Amino Acid:
SQSGQDSTRWHVVRKFLSLI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
71.8
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.8
0.6
0.8
71.6
32.9
Minor 5ss
34.5
-1.8
2.8
34.8
41.1
Minor BPS
63
0.49
1.6
79.59
36.1

Associated Gene:

Gene:
FKTN
Ensembl Gene ID:
ENSAPLG00000013432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013985
51480087 - 51495609
15523