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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51500824_51503803_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51500824 - 51503803
Intron Length:
2980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATA
5'SS Class:
major
3'SS Sequence:
CTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AAATCTTCAATG
Flanking Amino Acid:
GQYPVLKSNKRSGASPKRTS
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
78.8
29.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
84.9
0.78
0.6
84.7
23
Minor 5ss
31.7
-2.1
3
40.3
45.4
Minor BPS
54.9
0.02
1.6
56.27
39.2

Associated Gene:

Gene:
FSD1L
Ensembl Gene ID:
ENSAPLG00000013516
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026860
51498929 - 51525579
26651