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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51521104_51524810_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51521104 - 51524810
Intron Length:
3707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTGTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTTGTAATT
Flanking Amino Acid:
MGEQREDLQRIVSTL
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.2
0.59
0.9
67.8
42.5
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
59.2
0.37
2
79.54
37.3

Associated Gene:

Gene:
FSD1L
Ensembl Gene ID:
ENSAPLG00000013516
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026860
51498929 - 51525579
26651
ENSAPLT00000014109
51498929 - 51525579
26651