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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5153003_5165150_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5153003 - 5165150
Intron Length:
12148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.4
0.68
0.7
77.1
24.9
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
65.1
0.47
1.6
75.16
36.6

Associated Gene:

Gene:
RAB27B
Ensembl Gene ID:
ENSAPLG00000023455
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033425
5146254 - 5165191
18938