Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51542744_51548296_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51542744 - 51548296

Intron Length:

5553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTGCA

5'SS Class:

major

3'SS Sequence:

ATTGCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

GTTCTTTTAGCT

Flanking Amino Acid:

GAEGRELKPMQRSAKRSSVS

Intron Amino Acid Position:

787

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

67.7

37.6

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

81.5

0.71

0.8

77.9

35.9

Minor 5ss

31.7

-2.1

3.3

37.8

42.2

Minor BPS

61.5

0.44

1.5

77.79

38.5

Associated Gene:

Gene:

SLC44A1

Ensembl Gene ID:

ENSAPLG00000013724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014317

51542660 - 51606167

63508