About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51550105_51551958_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51550105 - 51551958
Intron Length:
1854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
ATTCTCTTATTT
Flanking Amino Acid:
VGDFMLFLGKVLIVCSTGLA
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
63.7
0.51
1.5
79.4
36.8

Associated Gene:

Gene:
SLC44A1
Ensembl Gene ID:
ENSAPLG00000013724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042315
51545903 - 51606167
60265
ENSAPLT00000014317
51542660 - 51606167
63508