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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51552097_51553216_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51552097 - 51553216
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCATCCCAAATT
Flanking Amino Acid:
LEKCLTYLNQNAYTATAINS
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
52.9
0.17
2
73.27
43.8

Associated Gene:

Gene:
SLC44A1
Ensembl Gene ID:
ENSAPLG00000013724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014317
51542660 - 51606167
63508
ENSAPLT00000042315
51545903 - 51606167
60265