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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51560014_51561899_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51560014 - 51561899
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTAAAACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
LTIIVILGSLGGTGVLWWLY
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
73
0.57
1
73.6
28.6
Major PPT
57.8
0.18
0.9
51.4
35.8
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
SLC44A1
Ensembl Gene ID:
ENSAPLG00000013724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042315
51545903 - 51606167
60265
ENSAPLT00000014317
51542660 - 51606167
63508