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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51578059_51586397_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51578059 - 51586397
Intron Length:
8339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATTCACATATTT
Flanking Amino Acid:
VNSGLDLTQKKYVFFLDPCN
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
87.8
0.85
0.6
81.8
30.3
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
47
-0.1
2
70.27
40.3

Associated Gene:

Gene:
SLC44A1
Ensembl Gene ID:
ENSAPLG00000013724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042315
51545903 - 51606167
60265
ENSAPLT00000014317
51542660 - 51606167
63508