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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51586541_51589159_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51586541 - 51589159
Intron Length:
2619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
LLFILFCVGMGFICGFSIAT
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
SLC44A1
Ensembl Gene ID:
ENSAPLG00000013724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042315
51545903 - 51606167
60265
ENSAPLT00000014317
51542660 - 51606167
63508