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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51712861_51716761_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51712861 - 51716761
Intron Length:
3901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGTCTCCTAACT
Flanking Amino Acid:
LSYPPYEQHECHFPNKAMPS
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.1
0.59
1
73.5
41.9
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
65.1
0.55
1.7
83.08
37.3

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886