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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51735520_51738550_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51735520 - 51738550
Intron Length:
3031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTTTTCTCACTT
Flanking Amino Acid:
LLNAEVKLQQVIVSGYRMRL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
73.6
0.53
0.8
65.5
36
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
55
0.24
1.8
75.15
42.4

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886