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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51751704_51755073_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51751704 - 51755073
Intron Length:
3370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCAGTATG
5'SS Class:
major
3'SS Sequence:
AAAATATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTCTTTGATT
Flanking Amino Acid:
ESSQEMDLIRTLLKGKALWD
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
72.7
44.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
60.1
0.23
1
51.4
41.9
Minor 5ss
34.3
-1.8
2.7
35.2
40.7
Minor BPS
70.6
0.73
1.2
78.04
39.4

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886