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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51755263_51756149_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51755263 - 51756149
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ACTTCCAAAATT
Flanking Amino Acid:
AIQTISRFMECVNLDKLEPV
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
77.6
33.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
69.8
0.45
0.9
62.1
39.8
Minor 5ss
36.1
-1.6
3.2
46.6
48.7
Minor BPS
55.1
0.24
1.9
75.02
42.1

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886