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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51756624_51756958_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51756624 - 51756958
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTCCTGCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTCCCTTTTCT
Flanking Amino Acid:
QMPYPCYVDDIFLRVMSRSM
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.8
0.65
0.8
76.4
32.2
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
45
-0.3
3.6
78.84
42.8

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886