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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51758483_51759065_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51758483 - 51759065
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCACTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCCCACTC
Flanking Amino Acid:
MTWYIESVFPGQYGIPRPWY
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.4
0.51
0.8
69.5
30.8
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
44.7
-0.4
2
59.6
39.7

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886