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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5175943_5176573_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5175943 - 5176573
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTCACTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TCCACTTTGACT
Flanking Amino Acid:
QFLNHLTKSKVYNFPGGEIQ
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
75.8
0.58
0.9
65.7
40
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
66.3
0.6
1.3
75.36
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040762
5171491 - 5178275
6785