Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51760469_51760976_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51760469 - 51760976

Intron Length:

508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

TCTTGTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

TGTGCCCTGAGT

Flanking Amino Acid:

VCPQHNVLFDLLTVEEHIWF

Intron Amino Acid Position:

988

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

38.3

Major BPS

58.6

0.22

1.5

38.9

Major PPT

80.5

0.69

0.8

72.9

37.4

Minor 5ss

33.2

-1.9

2.8

42.7

38.4

Minor BPS

49.2

0.02

2.1

72.78

44.1

Associated Gene:

Gene:

ABCA1

Ensembl Gene ID:

ENSAPLG00000014219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015088

51707899 - 51779784

71886