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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51766202_51766542_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51766202 - 51766542
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGAGG
5'SS Class:
major
3'SS Sequence:
TTCTTGCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATT
Flanking Amino Acid:
FDPNDSDIDPESRETDLLSG
Intron Amino Acid Position:
1301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.9
45.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.8
0.56
0.9
70.7
34.8
Minor 5ss
37.8
-1.4
3.1
48.8
47
Minor BPS
64
0.52
1.8
82.28
39

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886