About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51767663_51768358_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51767663 - 51768358
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTCCTGACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GTTGTCTTACCT
Flanking Amino Acid:
GTRCMQGHSIPDTPCTVGQT
Intron Amino Acid Position:
1425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
67
0.38
1
61
39.3
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
63
0.49
1.7
79.89
42.3

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886