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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5176799_5178182_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5176799 - 5178182
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
TCCCTAATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TTTTCCCTAATG
Flanking Amino Acid:
SKGNEWPKKEERKGNWSLMK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
65.6
0.35
1
58.4
41
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
73.4
0.6
1.7
80.27
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040762
5171491 - 5178275
6785