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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_51768798_51769233_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51768798 - 51769233
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGTT
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CCATATGTAACT
Flanking Amino Acid:
VKTYAQIIGKSLKNKIWVNE
Intron Amino Acid Position:
1519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
76.2
39.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
42.8
-0.8
3.6
66.4
45.1
Minor BPS
47.5
-0.1
2.2
65
45.6

Associated Gene:

Gene:
ABCA1
Ensembl Gene ID:
ENSAPLG00000014219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015088
51707899 - 51779784
71886